PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g15980

Common Name

GSCOC_T00016496001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 183aa MW: 21304.4 Da PI: 8.9504

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g15980	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.7e-27	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r++r++tr gCka++ vk +k+gkw+vt+++++H+H+l+ Cc01_g15980 11 EFYDDYARHLGFVMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKDQYGPVRKPRSSTREGCKAMMLVKVNKSGKWVVTRFVKDHTHPLV 100 6**************************************9999999**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-25	11	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEFDSEDAAK EFYDDYARHL GFVMRIDQCR RSEVDKRILS RRLSCNKQGY YVKMKDQYGP 60 VRKPRSSTRE GCKAMMLVKV NKSGKWVVTR FVKDHTHPLV ASSRTCRTAM DHKDRKIQEL 120 TLELERQDKL CNLYHEQIIT FLQSVEEETG LLSTKIEAAV KNVMEMEAEA KQQSNLQQAH 180 LQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113305.1	1e-135	protein FAR1-RELATED SEQUENCE 2-like, partial
TrEMBL	A0A068U8P2	1e-134	A0A068U8P2_COFCA; Uncharacterized protein
STRING	XP_009779434.1	4e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-69	FAR1 family protein