PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g15990

Common Name

GSCOC_T00016495001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 253aa MW: 29370.2 Da PI: 6.4027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g15990	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.8	2.7e-26	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + ++tr gC a+l+v ++ +kw+vtk+++eHnH+l+ Cc01_g15990 76 DFYVAYGRQTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVQRKDR-VlpPPPVTREGCPAMLRVAFKDGAKWVVTKFVKEHNHSLM 166 6****************************************98883322.245899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-23	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDNSTSQVFN SVERKSFLPI DSNGNVFLDD ELSTSMELCI GEDDKCVGQL MAMPLTENLI 60 EPHIGMEFNS RDDARDFYVA YGRQTGFTVR IHHNRRSRIN NMVIGQDFVC SKEGFREKKY 120 VQRKDRVLPP PPVTREGCPA MLRVAFKDGA KWVVTKFVKE HNHSLMSPNK VPWRGCGKNL 180 INQDEKDQRI RELTLELYNE RQRCKRRCAV YQEQLQTLLK YIEDHTDHLS KSVQEVVERV 240 QSIENEELED SE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	205	RQRCKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092392.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_027092402.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_027178367.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	A0A068U6N1	0.0	A0A068U6N1_COFCA; Uncharacterized protein
STRING	XP_009620541.1	1e-132	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	7e-37	FAR1 family protein