PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g16390
Common NameGSCOC_T00016448001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 509aa    MW: 54813 Da    PI: 6.6689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g16390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09322369455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cc01_g16390 322 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 369
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-17316385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-10316373No hitNo description
Gene3DG3DSA:4.10.280.107.6E-17318389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6322369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDKEYFLNAA GTQLPLQFEA WNSFSPAPEL NCSSGEASNC CLNPNWDKPA GHYARHGSAL  60
SSMVSSAMAP NSSPFPPGAA SYASCNTSCY STMPLSSPPK LQVPVLNENF SNLRNSVAPN  120
PPLPALSADP GFAERAAKLS CFGSRSFNGR TSQFGVHNNA ELPYGSSTPT VANGKLPRAS  180
SSPLLKRGGS PPLENNNLVP LAAANSNEES SVSEQVPSGE TGLKTPNESN PRKRKAVARG  240
KAKEDGSSQA ANHNKGAEAD IDSSAKRSKM TEATASDDQG VKIEERKGSD NKTGDDKANQ  300
RPPEPPKDYI HVRARRGQAT DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE  360
IINYVQSLQR QVEFLSMKLA SVNPRLDNMD NILSKDLYQP NASVPPPLFP MDASEPALYK  420
NPSQQNQELQ SNNGSVDQID TALCRTLGLQ LPHLDGFTEG LSQFAGFCED DLHSIVRMGY  480
SHNPDTDAAF HSQTFPVANQ TCPMKIEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027114119.10.0transcription factor bHLH62-like
TrEMBLA0A068U6J30.0A0A068U6J3_COFCA; Uncharacterized protein
STRINGEMJ023811e-161(Prunus persica)
STRINGPGSC0003DMT4000536391e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-89bHLH family protein