PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g17380
Common NameGSCOC_T00016331001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 996aa    MW: 110468 Da    PI: 5.0852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g17380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.6e-19854950295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + led  ++++W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v++  ++ ++++++
  Cc01_g17380 854 QKVLKQSDVGNLGRIVLPKKEAETHlpELESRDGIPIALEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIVIY--SDtKCGKYL 948
                  79*************************888999999*****7778*******99777777777777.********************..444898887 PP

                  EE CS
           B3  94 vk 95 
                  ++
  Cc01_g17380 949 IR 950
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-27847962IPR015300DNA-binding pseudobarrel domain
CDDcd100152.61E-33851952No hitNo description
SuperFamilySSF1019362.09E-22852947IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503853955IPR003340B3 DNA binding domain
SMARTSM010198.6E-20853955IPR003340B3 DNA binding domain
PfamPF023623.8E-15854949IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MKQDEQVMSV NGGCGEREIW FGRDHRGHDQ DNSLLDDDDN DADVNNDPCS LFYTDFPPIP  60
DFPCMSSSSS SSSTPLPARA VASTSSSSSS SSSSAATSWA VFKDMNCMNA MENFGYMDLL  120
DNSDIWDPCS IFESENHHQP LEEDGNDNGN DGGLYFLQAN SELGVIFLEW LKQNKDHISA  180
EDMRSIKLKR STIDCASKRL GSTKEGKKQL LKLILEWVEQ YQLHKRRATE MVVITKGTRQ  240
NSHGDGVEAD CRMSKNASEA LQAGDDGDGL IKGMDVIMEE SAFPATAFDD DEDHMKQDEQ  300
VMSVNGGCGE REIWFGRDHR GHDQDNSLLD DDDNDADVNN DPCSLFYTDF PPIPDFPCMS  360
SSSSSSSTPL PARAVASTSS SSSSSSSSAA TSWAVFKSEA DDSFHPNSEA EMQRYHPLER  420
QCDEVVNAAA PAAALSSTAS MEILPLPDDY CSNRDMNCMN AMENFGYMDL LDNSDIWDPC  480
SIFESENVNP PQQDHDHQFQ ERKPAPSAYG NDNGNDGGLY FLQANSELGV IFLEWLKQNK  540
DHISAEDMRS IKLKRSTIDC ASKRLGSTKE GKKQLLKLIL EWVEQYQLHK RRATEMDPST  600
ACLSPSPSPW VPPAPPCESC PNSLAAPFPP TMGGYARDPY SSAAAATVAV PVPVSNQTMN  660
NANLYLVPAE YHQPTDSPQS WSGPYSMPQA QYNPFPDNTK LPVSGSQAQA LYANPYPYQV  720
FDGSSGERLV RYGSSATKEA RKKRMARQRR ISLHQYRHHH THQNQPQSLV NEQHATRIPA  780
VGDDCTSNSR ANPGNWIYWS PAVPPPAPAP MASTMPPLVS SDKPSHRQAP TQPVPSSDRK  840
QSWKTEKNLK FLLQKVLKQS DVGNLGRIVL PKKEAETHLP ELESRDGIPI ALEDIGTSNV  900
WNMRYRFWPN NKSRMYLLEN TGDFVRVNGL QEGDFIVIYS DTKCGKYLIR GVKVRQPGSK  960
SEAKKPARRN QRNVPQAANN FAFASFKQTV KRTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-368499561108B3 domain-containing transcription factor FUS3
6j9b_D1e-368499561108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174476.10.0B3 domain-containing transcription factor ABI3
TrEMBLA0A068U8A00.0A0A068U8A0_COFCA; Uncharacterized protein
STRINGXP_009792996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-85B3 family protein