PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18400
Common NameGSCOC_T00016210001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 156aa    MW: 17350.2 Da    PI: 6.8128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18400genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-211364256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  Cc01_g18400 13 KYRGIRRRP-WGKYAAEIRDPTRNG--ARLWLGTFDTAEEAARAYDRAAYALRGH 64
                 8********.**********98887..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.9741371IPR001471AP2/ERF domain
SMARTSM003802.0E-341377IPR001471AP2/ERF domain
PfamPF008471.1E-141364IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-241372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-321372IPR001471AP2/ERF domain
CDDcd000184.50E-211373No hitNo description
PRINTSPR003671.1E-111425IPR001471AP2/ERF domain
PRINTSPR003671.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MENDQEKGKK VIKYRGIRRR PWGKYAAEIR DPTRNGARLW LGTFDTAEEA ARAYDRAAYA  60
LRGHQALLNF PNDGHYRNAD PAGSSLDLSQ LPSSSMNLPN SGGAGAPVET PELEASPRGQ  120
EEQVIELEYL DNKLLEDLLG SQFQRQDHSK RPKLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2913731474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063540.13e-99ethylene-responsive transcription factor ERF098-like
RefseqXP_027161019.13e-99ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A068U5J41e-109A0A068U5J4_COFCA; Uncharacterized protein
STRINGXP_009610278.19e-51(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]