PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18550
Common NameGSCOC_T00016191001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 198aa    MW: 22239.2 Da    PI: 9.9668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-054062123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C+k F++   L  H++ H
  Cc01_g18550 40 YRCSFCNKEFRSAQALGGHMNIH 62
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.36E-83667No hitNo description
Gene3DG3DSA:3.30.160.601.0E-53866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1E-44062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2174067IPR007087Zinc finger, C2H2
PfamPF139124.8E-84064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEKVDLSGEK LKKGTCCWDH AKFSYEKHGA YGFSWQQRSY RCSFCNKEFR SAQALGGHMN  60
IHRRERARMR LSPSSDGLNS TPHTNPNFSS PSSALSADTL SSFAGFSSPI SSASTAKQAA  120
AVCQSECDDH RLTWARRHVP QNLSKRALLE VKELPILAKR TETRVWKKKE VVRLDLNMGF  180
FRDAKDDLDL ELRVGLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071413.11e-133transcriptional regulator SUPERMAN-like
RefseqXP_027174364.11e-133transcriptional regulator SUPERMAN-like
TrEMBLA0A068U5I31e-145A0A068U5I3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein