PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18710
Common NameGSCOC_T00016165001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 185aa    MW: 20845.6 Da    PI: 9.4699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-203484155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  Cc01_g18710 34 SHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 84
                 78********.**********883....5999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-133484IPR001471AP2/ERF domain
CDDcd000186.89E-303491No hitNo description
SuperFamilySSF541717.19E-223492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-313592IPR001471AP2/ERF domain
SMARTSM003802.8E-3435100IPR001471AP2/ERF domain
PROSITE profilePS5103221.7463592IPR001471AP2/ERF domain
PRINTSPR003676.0E-103647IPR001471AP2/ERF domain
PRINTSPR003676.0E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDVDHFHQEH NNANAAVRRG VQVTPSSLRV VKESHFRGVR KRPWGRYAAE IRDPWKKTRR  60
WLGTFDTAEE AALAYDEAAR SLRGPKAKTN FGSPALTPMS FTPPVMVQVP SVNPTGLAEN  120
FPHWCSPAFF ATDEADRSTE RAARSEYTGY KLETIGVMMS EREMDFKGEK KPFLFDLNLP  180
APLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-193191162ATERF1
3gcc_A1e-193191162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787350.0KF278735.1 Coffea arabica ethylene response factor 4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095564.11e-135ethylene-responsive transcription factor 12-like
TrEMBLA0A068U5A21e-134A0A068U5A2_COFCA; Uncharacterized protein
STRINGXP_009618026.15e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA141361212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-25ERF domain protein 12