PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g19370
Common NameGSCOC_T00016066001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 87aa    MW: 9911.24 Da    PI: 8.506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g19370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.32e-08144696128
          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + + +g+k+ L f++g++ kg+kt+W m +yrl
  Cc01_g19370  14 SAAWMGVKRRLCFFEGEHGKGSKTNWNMIQYRL 46 
                  45679**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.023181IPR003441NAC domain
SuperFamilySSF1019413.01E-101479IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGTGRRWDAQ TIKSAAWMGV KRRLCFFEGE HGKGSKTNWN MIQYRLLHHC CSIECDHRRP  60
RVSSAAPSQP DDGVLCKVYE DLDESR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589729.11e-14PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A068U6516e-59A0A068U651_COFCA; Uncharacterized protein
STRINGXP_009589729.15e-14(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1770934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.32e-09NAC family protein