PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g20540

Common Name

GSCOC_T00015920001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 182aa MW: 20004.4 Da PI: 4.98

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g20540	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	172.2	5.7e-54	36	131	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lPanakisk+aket+qec+sefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y+eplk yl+++relege+ Cc01_g20540 36 KEQDRLLPIANVGRIMKQILPANAKISKEAKETMQECASEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDEYAEPLKRYLNRFRELEGER 131 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-53	31	151	IPR009072	Histone-fold
SuperFamily	SSF47113	2.42E-41	38	161	IPR009072	Histone-fold
Pfam	PF00808	1.9E-27	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.8E-19	69	87	No hit	No description
PROSITE pattern	PS00685	0	72	88	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.8E-19	88	106	No hit	No description
PRINTS	PR00615	3.8E-19	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MVDSIIEGEG EGEALNKYKA SVAAGSGSGD DGMVIKEQDR LLPIANVGRI MKQILPANAK 60 ISKEAKETMQ ECASEFISFV TGEASDKCHK EKRKTVNGDD ICWALGSLGF DEYAEPLKRY 120 LNRFRELEGE RANQNKSGNS EEKVMNQNLA EPRKITTHVS PTSINFNFMD ESSNSLSRSC 180 F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	3e-43	35	126	1	92	Transcription factor HapC (Eurofung)
4g92_B	3e-43	35	126	1	92	Transcription factor HapC (Eurofung)
5g49_A	3e-43	33	126	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027174014.1	1e-122	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	4e-61	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A068U5D1	1e-131	A0A068U5D1_COFCA; Uncharacterized protein
STRING	XP_010269452.1	9e-75	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-63	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]