PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g21420
Common NameGSCOC_T00004982001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 182aa    MW: 20788.6 Da    PI: 6.9327
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g21420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.8e-152183264
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
       bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64
                 ++lk+ +rk++NR++A+rsR +K +++eeL + v  L++eN+++ ++++  +++++++ s+++
  Cc01_g21420 21 CDLKKMKRKESNRLSAQRSRNKKHQQLEELLRQVNLLKEENQSYSDRINATNQMYQNMASQNK 83
                 89*********************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.1E-111978No hitNo description
SMARTSM003385.0E-132084IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4842285IPR004827Basic-leucine zipper domain
PfamPF001703.5E-122383IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.66E-102379No hitNo description
CDDcd147022.14E-152576No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAPDKSFMNF GSKGDPCNAK CDLKKMKRKE SNRLSAQRSR NKKHQQLEEL LRQVNLLKEE  60
NQSYSDRINA TNQMYQNMAS QNKVLRAQFD ELSDRLRSMN DVIHIASEVN GVAIDTQEIP  120
DTSHKPWQLP FPAQPMLQDP FLPQPILQDS FLPQPPPLLQ DPWHLSCVNQ PIAASADYFL  180
D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148224.11e-129bZIP transcription factor 53-like
RefseqXP_027155070.11e-129bZIP transcription factor 53-like
TrEMBLA0A068V8U71e-131A0A068V8U7_COFCA; Uncharacterized protein
STRINGAquca_022_00003.14e-36(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28102351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-32basic region/leucine zipper motif 53