PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g01010
Common NameGSCOC_T00019909001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21452.7 Da    PI: 5.4146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g01010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.3e-141391856
                 HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +F+++ ++  + + +LAk lgL+ rqV++WFqN+Ra++k
  Cc02_g01010  1 MFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWK 39
                 69999*********************************9 PP
2HD-ZIP_I/II98.18.3e-321771793
  HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                 +F++e kLep++K++la++Lglqprqv +WFqn+RAR+k+k+lE++y++Lk+++dal ++ e+L+ke+e+L e+l++
  Cc02_g01010  1 MFNREAKLEPRNKMQLAKDLGLQPRQVSIWFQNKRARWKSKKLEQEYRVLKANFDALCHQFEALKKENESLLEQLHT 77
                 699999******************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.09141IPR001356Homeobox domain
SMARTSM003890.0045145IPR001356Homeobox domain
PfamPF000461.6E-11139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-15248IPR009057Homeodomain-like
SuperFamilySSF466897.27E-12251IPR009057Homeodomain-like
CDDcd000868.14E-10242No hitNo description
PRINTSPR000318.0E-61221IPR000047Helix-turn-helix motif
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PRINTSPR000318.0E-62137IPR000047Helix-turn-helix motif
PfamPF021831.1E-134182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MFNREAKLEP RNKMQLAKDL GLQPRQVSIW FQNKRARWKS KKLEQEYRVL KANFDALCHQ  60
FEALKKENES LLEQLHTLNG LLENSNKRQS SSKDSNENAE HTAPPKRDEH RERREDDERT  120
TKVNVDGVGV DEHFGKEDQA DFDILTEQGE SSSASRKPWC NLVSDGLLDE SCCPSSWWDF  180
SDGLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109984.11e-131homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A068U9M61e-134A0A068U9M6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-31homeobox 7