PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g01410
Common NameGSCOC_T00019964001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 274aa    MW: 30516 Da    PI: 5.8109
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g01410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.73.6e-26160209352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  + +++++++kyF+ pi++AAkeL+v+lTvLK++CR+++I+RWPhRkiksl
  Cc02_g01410 160 SALEVDEIQKYFDVPITKAAKELKVGLTVLKKRCRELNIRRWPHRKIKSL 209
                  67899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.665143229IPR003035RWP-RK domain
PfamPF020422.0E-22162209IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNPPALSVVY QLENLLASDG SLYFEEQPPS GAWEQSYLAF PESLGQCTAG ICNCKEPLHA  60
WKWKNNSIPC LEMEFKDFED ICGDFGWHSP PDVKEPFFEG DVNVVDAKPL NAAGEIRDQA  120
LLENGETVFG EASGGNAVCS RSSEPLVSDD GLVSGRYKSS ALEVDEIQKY FDVPITKAAK  180
ELKVGLTVLK KRCRELNIRR WPHRKIKSLK SLIDSAKELG LTSEIEMLEE HKRMLKVLPE  240
MELTERTKKL RQACFKANYK KRRAMAAAAA AMA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115565.10.0protein RKD3-like
RefseqXP_027161436.10.0protein RKD3
TrEMBLA0A068U9R90.0A0A068U9R9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.19e-41RWP-RK domain-containing protein