PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g02330
Common NameGSCOC_T00020086001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 337aa    MW: 37089.4 Da    PI: 6.5098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g02330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1266110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Cc02_g02330  66 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 110
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1660116IPR009057Homeodomain-like
PROSITE profilePS5129414.1861115IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1864113IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.1E-664116IPR009057Homeodomain-like
SMARTSM007176.5E-1065113IPR001005SANT/Myb domain
PfamPF002495.0E-1066110IPR001005SANT/Myb domain
CDDcd001671.37E-768111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVSLNPNPPE DFYLDPMGMA LPNLGSFTNT PASVAVATAS TASTTSLSSE DPSKKVRKPY  60
TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKSGAN  120
EHLPPPRPKR KAAHPYPQKA SKSAPALPQV SASLQDSPSS HEHGILPRAD YSNFHGNTVT  180
GAALPCWTEN AIGAGNLSPG EKGDLRWGHQ LMANNYCYSS DESTPHSKTQ PTGEKINQGN  240
HGPPRVLPDF TEVYSFIGSI FDPSVTGHVQ KLKRMDPIDV ETVLLLMRNL SINLTSPDFE  300
DHRRLISSCE LGSGNEDEND KNDTVQDKCE DTCQYV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103691.10.0protein REVEILLE 6-like
SwissprotQ8H0W31e-106RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A068UAB80.0A0A068UAB8_COFCA; Uncharacterized protein
STRINGXP_010261344.11e-134(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-89MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]