PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03660
Common NameGSCOC_T00020257001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 251aa    MW: 28473.8 Da    PI: 5.988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-1299149153
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                  +r++h  +Er RR+++ + f+ Lr llP       ++K s ++ + +Av+YI +
  Cc02_g03660  99 KRTSHRDVERLRRQEMANLFASLRNLLPLeY---IKGKRSMSDQVHQAVNYITH 149
                  7****************************77...******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1295165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.09E-996155No hitNo description
PROSITE profilePS5088812.86298150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-999166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-999149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDDFTSSLIP LQQDDDSQLF PYDLTIPTIH PYLDDTIHHQ DLGNQAASSL APHQQQHYDQ  60
VTSIDDDDNN NHHPKGRQRK KPSSAIPADN NDPDDSKQKR TSHRDVERLR RQEMANLFAS  120
LRNLLPLEYI KGKRSMSDQV HQAVNYITHK EKNIRELKVK RDKLRNLMGG SSDLNVKSVE  180
ETNSSSTTFT VKQCESGGIE ILMKNDLAGN CFPLSRVLDM LLDEGLNVVN CVCTKVDEKF  240
LYTIQTEVQL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110KRTSHRDVERLRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101320.10.0transcription factor bHLH36-like
TrEMBLA0A068UAH60.0A0A068UAH6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-36bHLH family protein