PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g05620

Common Name

GSCOC_T00039075001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 238aa MW: 25914.7 Da PI: 8.8692

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g05620	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118	5.7e-37	54	151	1	97
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+++pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l+++l+++ Cc02_g05620 54 PCAACKQMRRRCSAKkCPFSPYFPPSEPLRFASVHRVFGASNVSKMLAEVPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESLQQQLNSA 151 7*********8655****************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.752	53	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-37	54	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MIISHFTKKR KKEKKDHGTS LIIDHYFFFS FFGGDGIRRG SSVLPGRCLS VIRPCAACKQ 60 MRRRCSAKKC PFSPYFPPSE PLRFASVHRV FGASNVSKML AEVPESLRAE VAISLVYEAD 120 ARLRDPVYGC TAEISALQRQ VESLQQQLNS AWDELLKYKN PHHEADIFNA EPPPSHDVAL 180 LPSVATTAAF PPPPSPTVLL VPPPPPTSSG SLLLSSSASS NQYCPLSAAA DFSTISN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-38	54	158	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-38	54	158	11	114	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	11	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027110660.1	1e-109	LOB domain-containing protein 3-like
Swissprot	Q9AT61	3e-49	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A068UZS7	1e-173	A0A068UZS7_COFCA; Uncharacterized protein
STRING	VIT_13s0067g02380.t01	1e-53	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-51	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]