PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g05630

Common Name

GSCOC_T00039076001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 234aa MW: 25380.8 Da PI: 8.4932

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g05630	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.7e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vh++FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++ Cc02_g05630 45 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHRVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQSLQAELNAVR 142 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Cc02_g05630 143 AE 144 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.832	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-42	45	142	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSRERERLEE IGKKIKRESE VFSSQLGRRH MLGGDGGGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PQKFASVHRV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISTLQQQ VQSLQAELNA VRAEILQYRF RETSNINIHV PSNPNLALLS SGAVSIAALP 180 PTPPHPPPPP PPHLPPPPPS LPHTSPSSSM YSPPSSTAAD FSTISNENIS FFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	45	161	11	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	45	161	11	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027162905.1	1e-137	LOB domain-containing protein 15
Swissprot	Q8L5T5	5e-82	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A068V044	1e-169	A0A068V044_COFCA; Uncharacterized protein
STRING	VIT_13s0067g02380.t01	1e-108	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-82	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]