PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g06210

Common Name

GSCOC_T00039146001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 176aa MW: 19360.1 Da PI: 7.3035

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g06210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	4e-41	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C ++C +apyf +++p+kfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l l+k Cc02_g06210 11 SCAACKFLKRRCIPNCQFAPYFRSDEPNKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQKKMVELQHDLLLAK 108 6********************************************************************************************98887 PP DUF260 99 e 99 + Cc02_g06210 109 A 109 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.586	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-40	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKNQEPRSSS SCAACKFLKR RCIPNCQFAP YFRSDEPNKF AKVHKVFGAS NVSKILNEVP 60 EEQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQKKMVEL QHDLLLAKAR LAYCATTKPA 120 PTSAIFLEGP SNVASNIDFP ASAGLELEEA FYHNSSVMGQ NANGWMNELG QFPLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	6	111	6	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	6	111	6	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104297.1	1e-129	LOB domain-containing protein 21-like
Refseq	XP_027110763.1	1e-129	LOB domain-containing protein 21-like
Refseq	XP_027162239.1	1e-129	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A068UZL3	1e-128	A0A068UZL3_COFCA; Uncharacterized protein
STRING	XP_009786680.1	6e-78	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	8e-65	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]