PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g08330
Common NameGSCOC_T00029808001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 211aa    MW: 22999.9 Da    PI: 7.9906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g08330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052105127123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg+ F     L  H+r+H
  Cc02_g08330 105 HECSICGQEFAVGQALGGHMRRH 127
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-856127No hitNo description
PfamPF139123.7E-135782IPR007087Zinc finger, C2H2
PROSITE profilePS501579.915885IPR007087Zinc finger, C2H2
SMARTSM003550.165880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PfamPF139129.1E-10104129IPR007087Zinc finger, C2H2
SMARTSM003550.11105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNMMNVGTKR AREPDQFDSI TTMANCLMLL SRAGEFEALN IFHHNNSSDN SHNPSRVFEC  60
KTCNRQFPSF QALGGHRASH KKPKLGADLS LQSQVQTSPP KPKTHECSIC GQEFAVGQAL  120
GGHMRRHRAA MNEEIGYHQS PVSSLSSGQQ HQSPVSSLSS GQHEPVVQKS NTSSGRVCCL  180
DLNLTPLEND LEFRLGKVVA PPVDCFLQGC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2279890.0JX227989.1 Coffea canephora clone BAC CC-2-7I, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115637.11e-155zinc finger protein ZAT11-like
RefseqXP_027156644.11e-155zinc finger protein ZAT11-like
RefseqXP_027185750.11e-155zinc finger protein ZAT11-like
TrEMBLA0A068TVQ81e-154A0A068TVQ8_COFCA; Uncharacterized protein
STRINGXP_009593204.16e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-41C2H2 family protein