PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g08940
Common NameGSCOC_T00029726001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 256aa    MW: 28856.4 Da    PI: 8.8747
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g08940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  v+ +G ++W++ ++  g+ R++k+c++rw +yl
      Cc02_g08940 14 KGPWTPEEDQILVSFVQHYGHENWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.66.1e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++l
      Cc02_g08940  67 RGNFSKEEEESIIKLHQIMGNR-WSAIANRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.329961IPR017930Myb domain
SuperFamilySSF466892.06E-3110108IPR009057Homeodomain-like
SMARTSM007173.0E-141363IPR001005SANT/Myb domain
PfamPF002492.5E-161461IPR001005SANT/Myb domain
CDDcd001674.51E-111661No hitNo description
PROSITE profilePS5129426.12262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2765116IPR009057Homeodomain-like
SMARTSM007178.4E-1866114IPR001005SANT/Myb domain
PfamPF002491.5E-1667112IPR001005SANT/Myb domain
CDDcd001675.25E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVRVPCCEKM GLKKGPWTPE EDQILVSFVQ HYGHENWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEESIIK LHQIMGNRWS AIANRLPGRT DNEIKNYWNT HLKKRVHQDA  120
VGQKDLRQLQ TNLWRSNSQG TPESGEASNH PGSEGNGDVQ NFTGSIHENF SSLDYSISAP  180
GPARVLAETN LKQSAKDSSK TNKYLGPASD SRLQFLSTGE SNIEPGEDSI KEDMVFWYNL  240
LLIAGKSQEK FAQIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1645370.0EU164537.1 Coffea canephora BAC 41C02, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104654.10.0transcription factor MYB15-like isoform X1
RefseqXP_027111207.10.0transcription factor MYB15-like isoform X1
TrEMBLA0A068TX920.0A0A068TX92_COFCA; Uncharacterized protein
STRINGcassava4.1_013493m2e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-73myb domain protein 15