PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g10640

Common Name

GSCOC_T00029507001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 407aa MW: 45141.7 Da PI: 5.1461

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g10640	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.8e-52	37	164	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv +yL++k+ gk++++ +++ e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + k Cc02_g10640 37 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVCEIDVYKSEPWELAcySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRPVRH-K 132 579***********************99.88**********85336777888**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLvf++grap+g++t+Wvmheyrl Cc02_g10640 133 SQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 164 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-61	35	187	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	37	187	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	39	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGQELVAVAV TPSSSTTAVV GGGIGGSPVG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC 60 GKPFRFQAVC EIDVYKSEPW ELACYSSLKT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW 120 KATGKDRPVR HKSQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLVDEELE KAGVAQDAFV 180 LCRIFQKSGL GPPNGDRYAP FVEEEWDDDT ALLIPGGEAE DDMANGDEAR VDCNDLTPDI 240 NKTPRLIEHP SEPQGIPFIC KRERSEDPEP LSLGQNKRSK QDGPNSSHAN GSEDSTTTSQ 300 DPPPTMMTTN FSSALLEFPL LESVEPKETQ PASTATFDSS NLEKSVPPGY LKFISNLENE 360 ILNVSMERET LKIEVMRAQA MINILQSRID LLNKENEDLR RLVRGG*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGQELVAVAV TPSSSTTAVV GGGIGGSPVG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC  60
GKPFRFQAVC EIDVYKSEPW ELACYSSLKT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW  120
KATGKDRPVR HKSQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLVDEELE KAGVAQDAFV  180
LCRIFQKSGL GPPNGDRYAP FVEEEWDDDT ALLIPGGEAE DDMANGDEAR VDCNDLTPDI  240
NKTPRLIEHP SEPQGIPFIC KRERSEDPEP LSLGQNKRSK QDGPNSSHAN GSEDSTTTSQ  300
DPPPTMMTTN FSSALLEFPL LESVEPKETQ PASTATFDSS NLEKSVPPGY LKFISNLENE  360
ILNVSMERET LKIEVMRAQA MINILQSRID LLNKENEDLR RLVRGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-52	36	187	19	168	NAC domain-containing protein 19
3swm_B	6e-52	36	187	19	168	NAC domain-containing protein 19
3swm_C	6e-52	36	187	19	168	NAC domain-containing protein 19
3swm_D	6e-52	36	187	19	168	NAC domain-containing protein 19
3swp_A	6e-52	36	187	19	168	NAC domain-containing protein 19
3swp_B	6e-52	36	187	19	168	NAC domain-containing protein 19
3swp_C	6e-52	36	187	19	168	NAC domain-containing protein 19
3swp_D	6e-52	36	187	19	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00612	ChIP-seq	Transfer from AT3G10490	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104903.1	0.0	NAC domain containing protein 50-like
Swissprot	Q9SQX9	1e-116	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A068TWS9	0.0	A0A068TWS9_COFCA; Uncharacterized protein
STRING	XP_009619467.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3140	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-112	NAC domain containing protein 50

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]