PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g11210

Common Name

GSCOC_T00029441001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 1372aa MW: 153574 Da PI: 7.4722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g11210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	1259	1282	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 +kC+ C +sF +k +L+ H+r Cc02_g11210 1259 HKCSieGCRMSFQTKAELVLHMRD 1282 799999****************96 PP
2	zf-C2H2	14.2	0.00013	1283	1306	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + ++H+r+H Cc02_g11210 1283 RCPvqGCGKRFSSHKYATSHQRVH 1306 79999*****************99 PP
3	zf-C2H2	11.6	0.00089	1342	1368	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Cc02_g11210 1342 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1368 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.2E-13	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.772	16	57	IPR003349	JmjN domain
Pfam	PF02375	3.2E-14	17	50	IPR003349	JmjN domain
SuperFamily	SSF51197	3.02E-26	250	417	No hit	No description
SMART	SM00558	4.2E-46	250	419	IPR003347	JmjC domain
PROSITE profile	PS51184	35.282	253	419	IPR003347	JmjC domain
Pfam	PF02373	7.2E-36	283	402	IPR003347	JmjC domain
SMART	SM00355	4.2	1259	1281	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	2.1	1282	1306	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.217	1282	1311	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.21E-5	1283	1319	No hit	No description
PROSITE pattern	PS00028	0	1284	1306	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.0E-6	1284	1310	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Gene3D	G3DSA:3.30.160.60	1.5E-9	1311	1336	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0023	1312	1336	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.593	1312	1341	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1314	1336	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.43E-10	1322	1364	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-11	1337	1365	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.19	1342	1368	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	1342	1371	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1344	1368	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1372 aa Download sequence Send to blast
MGVVEIPKWL EELPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKVIP PLPKPSKRYV 60 LYNLNKSLSK CPELGSEARA VFTTRHQELG QNGKRVKGAA GNQLIGAPKQ VWQSGEVYTL 120 EQFEAKSKNF AKSQLGVVKE VSPLVIEAMF WKAASEKPIY VEYANDVPGS GFGEPEGSFR 180 YFNRRRRRRR KRGTFDRNNQ GSSCNNDHVT NWVSGASTSL PSMSLDQSEN FSDGKFSNAS 240 NEMHGTAGWK LSNSSWNLQV IARSPGSLTR YMPDDIPGVT SPMVYIGMLF SWFAWHVEDH 300 ELHSLNFLHT GSPKTWYSVP GDYAFDFEEV VRLQAYGGNT DSLDALTLLG EKTTLFSPEV 360 IVAAGIPCCR LVQNPGEFVV TFPRAYHVGF SHGFNCGEAA NFSTPKWLTI AKEAAVRRAA 420 MNYLPMLSHQ QLLYLLTMSF VSRVPRSLLP GARSSRLKDR QKEERELSVK KAFIEDILKE 480 NHLLTILLQK NPSYRVVLWD VDLLPASSKD SELCSTVVTD GTQTREDSHL DNCSNQDLYT 540 QMSLYMDTIT DFYVDDADDI QNDYQVDSGT LPCVACGILG FPFMAVVQPS EQASRDLVPE 600 DQAMTQQLGV CQPAGCKSLD LDFRAESCIP ETRKLVKKNI NHPDEASPFA ESSPSTCSHM 660 EEDALSVDIN TSSFPVHVTA SSAVKFDRGW NLSTGYFRPQ LFCLEHAIET VELLRPKGGA 720 NVLGICHSDF QKIKAHSAVV AEEISIPFNY NEIPLGNASQ EDLYLIDHAI ENQEKDEGAQ 780 DWTSKLNLNL RHCVKMRKNF PSQKVKHALA LGGLFSDGVL HLKALKWQSR KSRSKRNSDP 840 TNFSKPSVSI QTEKVEEPVE KSGSRMSRKL GQVMIQYYRK RYKSKPRGSE GAIKALVVSE 900 KHPSDEISGA DSGNCKEKER DMSMNTHVRV EGPTCLAYSR KSKLRNEGQK VVSGGGLNEN 960 PSPLKLVDSS IATNPVAGNI NVHTGSGMSD ELVELNKNYN LLLKDSHKLS MINVAEETDE 1020 NHDSVNSENS AGSLGISVYD TESSEVMRED EIVCQINMAK RTCDVVTTNE SERKYHRKAD 1080 GDVLMKEASE PAPSCPHADE SSGERCNQQV ETTVLDKCQM SSGEMEKEIS SMKGADRERA 1140 VSSDVLTSNT SNPSLTEELE APREMPADDQ QQQQFQHTEK MRSKRKREVD IQNEDQPNFG 1200 SFSRSPCEGL RPRTKRDAAG DTTGAEKPFE DLSKGRKVNK HLNGSDLHKH KREQKRCSHK 1260 CSIEGCRMSF QTKAELVLHM RDRCPVQGCG KRFSSHKYAT SHQRVHDDDR PLKCPWKGCR 1320 MTFKWAWART EHIRVHTGER PYKCKVDGCG LSFRFVSDFS RHRRKTGHYV N*

Sequence ? help Back to Top

Protein Sequence Length: 1372 aa Download sequence Send to blast

MGVVEIPKWL EELPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKVIP PLPKPSKRYV  60
LYNLNKSLSK CPELGSEARA VFTTRHQELG QNGKRVKGAA GNQLIGAPKQ VWQSGEVYTL  120
EQFEAKSKNF AKSQLGVVKE VSPLVIEAMF WKAASEKPIY VEYANDVPGS GFGEPEGSFR  180
YFNRRRRRRR KRGTFDRNNQ GSSCNNDHVT NWVSGASTSL PSMSLDQSEN FSDGKFSNAS  240
NEMHGTAGWK LSNSSWNLQV IARSPGSLTR YMPDDIPGVT SPMVYIGMLF SWFAWHVEDH  300
ELHSLNFLHT GSPKTWYSVP GDYAFDFEEV VRLQAYGGNT DSLDALTLLG EKTTLFSPEV  360
IVAAGIPCCR LVQNPGEFVV TFPRAYHVGF SHGFNCGEAA NFSTPKWLTI AKEAAVRRAA  420
MNYLPMLSHQ QLLYLLTMSF VSRVPRSLLP GARSSRLKDR QKEERELSVK KAFIEDILKE  480
NHLLTILLQK NPSYRVVLWD VDLLPASSKD SELCSTVVTD GTQTREDSHL DNCSNQDLYT  540
QMSLYMDTIT DFYVDDADDI QNDYQVDSGT LPCVACGILG FPFMAVVQPS EQASRDLVPE  600
DQAMTQQLGV CQPAGCKSLD LDFRAESCIP ETRKLVKKNI NHPDEASPFA ESSPSTCSHM  660
EEDALSVDIN TSSFPVHVTA SSAVKFDRGW NLSTGYFRPQ LFCLEHAIET VELLRPKGGA  720
NVLGICHSDF QKIKAHSAVV AEEISIPFNY NEIPLGNASQ EDLYLIDHAI ENQEKDEGAQ  780
DWTSKLNLNL RHCVKMRKNF PSQKVKHALA LGGLFSDGVL HLKALKWQSR KSRSKRNSDP  840
TNFSKPSVSI QTEKVEEPVE KSGSRMSRKL GQVMIQYYRK RYKSKPRGSE GAIKALVVSE  900
KHPSDEISGA DSGNCKEKER DMSMNTHVRV EGPTCLAYSR KSKLRNEGQK VVSGGGLNEN  960
PSPLKLVDSS IATNPVAGNI NVHTGSGMSD ELVELNKNYN LLLKDSHKLS MINVAEETDE  1020
NHDSVNSENS AGSLGISVYD TESSEVMRED EIVCQINMAK RTCDVVTTNE SERKYHRKAD  1080
GDVLMKEASE PAPSCPHADE SSGERCNQQV ETTVLDKCQM SSGEMEKEIS SMKGADRERA  1140
VSSDVLTSNT SNPSLTEELE APREMPADDQ QQQQFQHTEK MRSKRKREVD IQNEDQPNFG  1200
SFSRSPCEGL RPRTKRDAAG DTTGAEKPFE DLSKGRKVNK HLNGSDLHKH KREQKRCSHK  1260
CSIEGCRMSF QTKAELVLHM RDRCPVQGCG KRFSSHKYAT SHQRVHDDDR PLKCPWKGCR  1320
MTFKWAWART EHIRVHTGER PYKCKVDGCG LSFRFVSDFS RHRRKTGHYV N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	2e-55	8	433	7	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	2e-55	8	433	7	346	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	188	RYFNRRRRRR
2	183	189	RRRRRRR
3	183	191	RRRRRRRKR
4	184	191	RRRRRRKR
5	185	191	RRRRRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104962.1	0.0	lysine-specific demethylase SE14-like
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A068TU52	0.0	A0A068TU52_COFCA; Uncharacterized protein
STRING	XP_009765922.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4835	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]