PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g11750

Common Name

GSCOC_T00029375001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 246aa MW: 27686.2 Da PI: 5.7774

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g11750	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.7e-05	81	135	6	54
HHHHHHHHHHHHHHH.HHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsaf.eeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 rE+ RRd++N++ L l + +s ++ +K++K++iL A++ + +L Cc02_g11750 81 AYREKMRRDKLNDRQtLSLSLYLFQeLSflldPERPPKVDKSAILGDATRMLIQL 135 579********84445555555533355555599***********998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.41E-8	75	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-8	80	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.81E-5	83	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MASPEEDSNW VFDFGLIEDI PVPGGDLPPL DPGFQNWSNN SFYNPNSVEL DGAFQSSQSR 60 KEASSRKRAR SGPCSATDSK AYREKMRRDK LNDRQTLSLS LYLFQELSFL LDPERPPKVD 120 KSAILGDATR MLIQLRDEAE KLKESYERLQ EKVNELKAEK NELRDEKQKQ KAEKDKLEHQ 180 LKALSSQTGF LSNPSAILAP FVAPHQVFSS KMTPFVGYPG TSMWHFMPPA AVDTSEDHVL 240 RPPVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269\|PubMed:17028341}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027111604.1	1e-171	transcription factor bHLH115-like
Refseq	XP_027154883.1	1e-171	transcription factor bHLH115-like
Refseq	XP_027163287.1	1e-171	transcription factor bHLH115-like
Swissprot	Q9C682	6e-67	BH115_ARATH; Transcription factor bHLH115
Swissprot	Q9FH37	8e-67	ILR3_ARATH; Transcription factor ILR3
TrEMBL	A0A068TUM6	1e-180	A0A068TUM6_COFCA; Uncharacterized protein
STRING	XP_008224874.1	1e-105	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA950	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-53	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Aparicio F,Pallás V The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response. Mol. Plant Pathol., 2017. 18(2): p. 173-186 [PMID:26929142] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Samira R, et al. The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis. Plant Mol. Biol., 2018. 97(4-5): p. 297-309 [PMID:29882068]