PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g12210
Common NameGSCOC_T00029313001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 258aa    MW: 29206.7 Da    PI: 5.0166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g12210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed +l+ ++k++G  +W+  ++  g+ R++k+c++rw +yl
      Cc02_g12210 14 KGPWSSDEDRKLIAYIKKYGIWNWNQMPEFAGLSRSGKSCRLRWVNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding48.91.5e-1568115246
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eEd+ +++ ++ lG+      W++Ia+ ++ gRt++q+k++w++
      Cc02_g12210  68 GNFTEEEDQTIINMHANLGSSfdlvVWSAIAKQLP-GRTDNQIKNHWHT 115
                      79*********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.194961IPR017930Myb domain
SuperFamilySSF466892.2E-2812113IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-221568IPR009057Homeodomain-like
CDDcd001671.12E-91661No hitNo description
PROSITE profilePS5129420.79762121IPR017930Myb domain
SMARTSM007171.3E-1166119IPR001005SANT/Myb domain
PfamPF002493.4E-1468115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2369121IPR009057Homeodomain-like
CDDcd001672.14E-1069117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRSGKQEKL AVKKGPWSSD EDRKLIAYIK KYGIWNWNQM PEFAGLSRSG KSCRLRWVNY  60
LRPDVKLGNF TEEEDQTIIN MHANLGSSFD LVVWSAIAKQ LPGRTDNQIK NHWHTRLKKR  120
LLNSPGGNAK ELATDTSEVS ELEGLLHVEN SINIPPILSP SCGHWDFGGS TQENTSSTEI  180
IEDSDQIFWT QPFLMGNLSM ESQPSAYIHS QFDPLIWAQE PPSPSSSFLD SGYCDSILFN  240
YSEKEDVSCL ERPEFQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141217108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159041.11e-175transcription factor MYB57-like
TrEMBLA0A068TTT10.0A0A068TTT1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-50myb domain protein 14