PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g12700
Common NameGSCOC_T00029249001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 479aa    MW: 53767.4 Da    PI: 10.5445
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g12700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-071247238
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     +rW t+E+++l  av ++G+ +W+ +a+++   Rtl+
      Cc02_g12700 12 KRWGTWEELILGGAVLRHGTQDWNVVASELR-ARTLY 47
                     69*****************************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF473706.15E-19260374IPR001487Bromodomain
SMARTSM002971.7E-18266374IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-15276375IPR001487Bromodomain
PfamPF004392.0E-9281358IPR001487Bromodomain
PROSITE profilePS5001410.222285355IPR001487Bromodomain
CDDcd043692.51E-7287369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGAEAMVVVP DKRWGTWEEL ILGGAVLRHG TQDWNVVASE LRARTLYPYC FTPQACKAKY  60
EDLRRRYSGS NAWFDELRKR RVAELKRELE KSEDSIGSLE TKIEILKAEK RHSSKADCGS  120
NGTESPAPLL RSDGNESFGK ETSKDGLSAS SFTQDTSISW SLYRQIPVLV SCAGTDIKQE  180
VSVSLEEQKD LHTNKLVETG NREGGTPRKR RGMRKRKDCN IEAKEGSIGE SDNHGSTNVV  240
SSSRCKETST SDCDQTIRLP GRDGNTKGAC QIRSDCLIGI FNSIAEYKVA FVFRHRLDSQ  300
KRARYKKIIR QHMDFDMIRS RLVSCSIHSA RELFRDLLLL ANNALVFYSK RTREYKSAVA  360
LRDIVLKAYR QHFKGSYNKA TSASLPMRSL YNPPVKPRSA RRRPSQPKQS AKLDKAEKFV  420
VNAPKVHPKP SDPDANVPLQ SLLPAKKGVK RPLKVKTASA KPQSKTPLPK DKKAARQR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16380RRRYSGSNAWFDELRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105197.10.0uncharacterized protein LOC113725945 isoform X1
TrEMBLA0A068TUA50.0A0A068TUA5_COFCA; Uncharacterized protein
STRINGXP_009778975.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.17e-38DNA-binding bromodomain-containing protein