PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g13270
Common NameGSCOC_T00029178001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 211aa    MW: 24858.1 Da    PI: 9.8146
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g13270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.3e-32261302102
                   HHHHHHHHHCTG.............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
  HSF_DNA-bind   2 Flkklyeilede.............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                   Fl+k+y++le+e               ++++sw+++g+ fvv+ + ef++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++         weF+h++
   Cc02_g13270  26 FLSKTYDLLEEEeergrreatergsWGQRVVSWTADGTGFVVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKTASKR---------WEFQHEK 113
                   99********7777777888877767799************************************************9988.........******* PP

                   XXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                   F+kg ++ll++i+rkk 
   Cc02_g13270 114 FQKGCRHLLSEIHRKKC 130
                   **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3417122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-4222128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-2622128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2926128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MARERRRPIV GQSSSSSSRI KSPAPFLSKT YDLLEEEEER GRREATERGS WGQRVVSWTA  60
DGTGFVVWSP AEFSELMLPR YFKHNNFSSF IRQLNTYGFK KTASKRWEFQ HEKFQKGCRH  120
LLSEIHRKKC EPSAFPQYLK ASEESNNSPS STVEENNTTR LLLMQENQNL KKERMELQMQ  180
IAHFKTLELK LMECLSFYWD DHHNKVRRLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-151012816129Heat shock factor protein 1
5d5v_B3e-151012816129Heat shock factor protein 1
5d5v_D3e-151012816129Heat shock factor protein 1
5d8k_B2e-15231283105Heat shock factor protein 2
5d8l_B2e-15231283105Heat shock factor protein 2
5d8l_D2e-15231283105Heat shock factor protein 2
5d8l_F2e-15231283105Heat shock factor protein 2
5d8l_H2e-15231283105Heat shock factor protein 2
5hdk_A2e-15231288110Heat shock factor protein 2
5hdk_B2e-15231288110Heat shock factor protein 2
5hdk_C2e-15231288110Heat shock factor protein 2
5hdk_D2e-15231288110Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105264.11e-156heat stress transcription factor B-2a-like
TrEMBLA0A068TTC01e-155A0A068TTC0_COFCA; Uncharacterized protein
STRINGEMJ133036e-90(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-37heat shock transcription factor B2A