PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g13310

Common Name

GSCOC_T00029173001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LSD

Protein Properties

Length: 257aa MW: 27550.6 Da PI: 4.3545

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g13310	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	167	191	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YP+G ++V+C++C+tV Cc02_g13310 167 CGSCRLLLAYPPGVKYVQCSCCQTV 191 ************************9 PP
2	zf-LSD1	36.5	8.1e-12	205	229	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC +C V Cc02_g13310 205 CGGCAVLLMYPYGAPSVRCCSCRSV 229 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.4E-14	164	194	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.3E-9	167	191	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.7E-9	202	231	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.2E-9	205	229	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGTEEKDLVK GGGGGEEEDD DDDDDGPPPG FHCIATQIEE NLVKEEKDAE INENEDVDGP 60 PPGWSSIPPA TFQPVHPSDV EMSDKQKEDE NEEGPPPGWH SVPLASQSSE AVLADTQTGN 120 HEDRTKYIDE GSQPGQKSVP PLKLLPPTPP QPLPAVSSPS EKGQMVCGSC RLLLAYPPGV 180 KYVQCSCCQT VNLVLEDHQV GQVKCGGCAV LLMYPYGAPS VRCCSCRSVT EIGAHNRRPP 240 LSVQQARRPL SVNRVH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027111779.1	1e-147	protein LOL2-like
TrEMBL	A0A068TTF7	0.0	A0A068TTF7_COFCA; Uncharacterized protein
STRING	XP_009765270.1	2e-58	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-36	lsd one like 2