PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14000
Common NameGSCOC_T00029070001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 179aa    MW: 20636.1 Da    PI: 8.2663
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.8e-201972457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 + ++t++q+  Le+ F+ n++++ ++r +LA++lgL+ r+V +W+qN+Ra++k+
  Cc02_g14000 19 KKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHELGLPPRKVAIWYQNKRARWKN 72
                 5679************************************************95 PP
2HD-ZIP_I/II106.12.8e-3418109293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qv+lLE+sF+ ++kL+p+r+++la+eLgl pr+va+W+qn+RAR+k+ +lE+d++aL+ ++++l ++nerL++eve+L++el++
  Cc02_g14000  18 HKKRLTQDQVSLLEKSFNFNNKLDPDRRSQLAHELGLPPRKVAIWYQNKRARWKNENLEVDHKALQLRLENLLADNERLQSEVERLKQELHK 109
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-19975IPR009057Homeodomain-like
PROSITE profilePS5007116.5031373IPR001356Homeobox domain
CDDcd000862.93E-151674No hitNo description
SMARTSM003892.5E-171677IPR001356Homeobox domain
PfamPF000466.4E-171972IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-202078IPR009057Homeodomain-like
PRINTSPR000313.5E-54453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000313.5E-55369IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDYHHIQSSV RKNELKFHKK RLTQDQVSLL EKSFNFNNKL DPDRRSQLAH ELGLPPRKVA  60
IWYQNKRARW KNENLEVDHK ALQLRLENLL ADNERLQSEV ERLKQELHKA QEMLLSVNNT  120
PYSSLSSQIS SSCDEVGSSS LVHGSRNHLD KDFFACLIGG EGQFGNTNDQ EFFRSSIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11020RKNELKFHKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027156201.11e-127homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A068TTU11e-128A0A068TTU1_COFCA; Uncharacterized protein
STRINGXP_009800499.14e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-29homeobox protein 52