PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14010
Common NameGSCOC_T00029069001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 302aa    MW: 34096.2 Da    PI: 9.1804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5371341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yLk+kv++ +++l ++i+e+d+yk++PwdLp k+  +e+ew+fFs+rd+ky++g r+nr+++sgyWkatg+dk++ls  ++
  Cc02_g14010   7 LPPGFRFHPTDEELINYYLKNKVSSATNPLVSIIAEIDLYKFNPWDLPDKALFGESEWFFFSPRDRKYPNGARPNRSAASGYWKATGTDKPILSYASQ 104
                  79****************************999***************7777899******************************************* PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +g+kk Lvfykgrap+g+kt+W+mheyrl
  Cc02_g14010 105 CIGVKKALVFYKGRAPNGTKTNWMMHEYRL 134
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-624161IPR003441NAC domain
PROSITE profilePS5100560.7917161IPR003441NAC domain
PfamPF023652.7E-288134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGINVLPPG FRFHPTDEEL INYYLKNKVS SATNPLVSII AEIDLYKFNP WDLPDKALFG  60
ESEWFFFSPR DRKYPNGARP NRSAASGYWK ATGTDKPILS YASQCIGVKK ALVFYKGRAP  120
NGTKTNWMMH EYRLLNDSHH SLVQKGSMRL DDWVLCRVRQ KSNNSIEPRE GNAKSRSKRT  180
FPCGFDAYGE GEIAQNISYF GNNHWHPQQN SDRLIPYGHL DIQGGTSSDQ SSSQENFEPS  240
QVNINMNHSM KDALESIKRV LSLGNLDEQG SKLPNKRLRS SLTPSSTYLE NSGIFVIPNN  300
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-70716517169NO APICAL MERISTEM PROTEIN
1ut4_B5e-70716517169NO APICAL MERISTEM PROTEIN
1ut7_A5e-70716517169NO APICAL MERISTEM PROTEIN
1ut7_B5e-70716517169NO APICAL MERISTEM PROTEIN
3swm_A5e-70716520172NAC domain-containing protein 19
3swm_B5e-70716520172NAC domain-containing protein 19
3swm_C5e-70716520172NAC domain-containing protein 19
3swm_D5e-70716520172NAC domain-containing protein 19
3swp_A5e-70716520172NAC domain-containing protein 19
3swp_B5e-70716520172NAC domain-containing protein 19
3swp_C5e-70716520172NAC domain-containing protein 19
3swp_D5e-70716520172NAC domain-containing protein 19
4dul_A5e-70716517169NAC domain-containing protein 19
4dul_B5e-70716517169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102676.10.0NAC transcription factor 29-like
SwissprotD2SMN43e-74NAMB1_HORVS; NAC transcription factor NAM-B1
SwissprotK4BWV23e-74NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A068TT870.0A0A068TT87_COFCA; Uncharacterized protein
STRINGPOPTR_0004s04920.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1742534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-75NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]