PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g14130

Common Name

GSCOC_T00029053001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

VOZ

Protein Properties

Length: 486aa MW: 53529.9 Da PI: 5.1601

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g14130	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	419.1	7.4e-129	206	425	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 ppp+aflgpkcalwdc+rpaq sew+ qdycs +hat+a eg pg++pvlrp+gi+lkd+llfaalsak+qgk+vgipecegaat+kspwna+el Cc02_g14130 206 PPPAAFLGPKCALWDCPRPAQRSEWCqtsQDYCSGYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQGKDVGIPECEGAATTKSPWNAPEL 303 89*********************944459*************************************************************** PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdek 193 fdl +lege irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+e+gglkrsyymdpqp++++ewhlyeyein++d +alyrlelklvd+k Cc02_g14130 304 FDLVVLEGEMIREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEYGGLKRSYYMDPQPMKNYEWHLYEYEINKYDVCALYRLELKLVDGK 401 ********************************************************************************************** PP VOZ 194 ksakgkvskdsladlqkklgrlta 217 ks+kgk+++ds++dlqk++ +lta Cc02_g14130 402 KSPKGKIATDSVTDLQKQMKKLTA 425 ********************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRSIDAAV LEEQVHQMLR 60 EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSALAAPKSE PDAQKADSGA 120 VFQEGFVAAQ ASQEQSFQLL DQCKNSPAGA NSMGVNNLGL PTQLEYHTFD LHQDFENQYF 180 QGFDGTGLCG EDALPQIAGF VQNFCPPPAA FLGPKCALWD CPRPAQRSEW CQTSQDYCSG 240 YHATIAPAEG YPGMAPVLRP GGIGLKDNLL FAALSAKAQG KDVGIPECEG AATTKSPWNA 300 PELFDLVVLE GEMIREWLFF DKPRRAFESG NRKQRSLPDY TGRGWHESRK QVMNEYGGLK 360 RSYYMDPQPM KNYEWHLYEY EINKYDVCAL YRLELKLVDG KKSPKGKIAT DSVTDLQKQM 420 KKLTAEFPSD KQRAIKGGAK AASKDAAGSI YSTPNRMPPT GEGFEYSTGA SYEYLVDNLN 480 GYYVT*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRSIDAAV LEEQVHQMLR  60
EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSALAAPKSE PDAQKADSGA  120
VFQEGFVAAQ ASQEQSFQLL DQCKNSPAGA NSMGVNNLGL PTQLEYHTFD LHQDFENQYF  180
QGFDGTGLCG EDALPQIAGF VQNFCPPPAA FLGPKCALWD CPRPAQRSEW CQTSQDYCSG  240
YHATIAPAEG YPGMAPVLRP GGIGLKDNLL FAALSAKAQG KDVGIPECEG AATTKSPWNA  300
PELFDLVVLE GEMIREWLFF DKPRRAFESG NRKQRSLPDY TGRGWHESRK QVMNEYGGLK  360
RSYYMDPQPM KNYEWHLYEY EINKYDVCAL YRLELKLVDG KKSPKGKIAT DSVTDLQKQM  420
KKLTAEFPSD KQRAIKGGAK AASKDAAGSI YSTPNRMPPT GEGFEYSTGA SYEYLVDNLN  480
GYYVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105411.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A068TU11	0.0	A0A068TU11_COFCA; Uncharacterized protein
STRING	VIT_10s0003g00500.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]