PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14220
Common NameGSCOC_T00013826001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 407aa    MW: 44999.2 Da    PI: 8.7256
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-1755115257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+++ +eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Cc02_g14220  55 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 115
                  89*****************99*************************************995 PP
2Wus_type_Homeobox111.64.1e-3654117265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
        Cc02_g14220  54 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 117
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-1249121IPR009057Homeodomain-like
PROSITE profilePS5007110.46351116IPR001356Homeobox domain
SMARTSM003895.6E-953120IPR001356Homeobox domain
CDDcd000869.46E-854117No hitNo description
Gene3DG3DSA:1.10.10.604.1E-754121IPR009057Homeodomain-like
PfamPF000464.3E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSQ HQWQHEINSS LISNGCQRAP SCASSGSEER SPEPKPRWNP  60
RPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEYGQVGDA NVFYWFQNRK SRSKHKQRHF  120
QSTTKSQPPQ IPHITSTPPA TKTTSLSSSS SSSEKSSQNS ADKTLSLGPK NLFDTSSSPT  180
ASVNQHFFQS HSAEFLPAPF FFPVQQPPSA AESTPPAAFS QGFCFSDAPS LSHLADNTIQ  240
NSSSILLSDL LLMNHLPTKK VQDEKIKLQQ QLNYTALTTP PITTSQSIFS PTRVAAVSSI  300
DHVHGVGETG SADPTKSTVF INDVAFEVTS AFFNVREAFG DDAVLVHSSG QPVMTNEWGV  360
TLQPLQHGAF YYLIRTSTSS SHDTTIDLVL NLRVVCFHFR SLRNFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101442.10.0WUSCHEL-related homeobox 9-like isoform X2
TrEMBLA0A068TN050.0A0A068TN05_COFCA; Uncharacterized protein
STRINGEOY281171e-150(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-60homeobox-3