PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14410
Common NameGSCOC_T00013849001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 382aa    MW: 42580 Da    PI: 6.7913
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14410genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.31.7e-31114192266
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 
                  +g+kdrhsk+ T++g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l  +               
  Cc02_g14410 114 TGRKDRHSKVGTARGPRDRRVRLSPNTAIEFYDVQDRLGYDRPSKAIDWLMKEAKAAIDALEHDssyatttnldgcsiL 192
                  79************************************************************99555544444444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-30114190IPR005333Transcription factor, TCP
PROSITE profilePS5136930.563116174IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVTSPDLCFA SSNEDDDENN KNEDKGYQYS HFYNQHFHQP DKSVGKSSID IHQEKWPDLI  60
SSGQTLDPNH QHIKSAKFKG RMQDVSNQGS TRLKPKRAKG NSIEIPGGRI FRSTGRKDRH  120
SKVGTARGPR DRRVRLSPNT AIEFYDVQDR LGYDRPSKAI DWLMKEAKAA IDALEHDSSY  180
ATTTNLDGCS ILMQPRNPLP EKGLDVQEES RINCSESACR IDGQEYMNND DTSINNFSFF  240
SMENGVIPTT SSLGFYSYPH GGEINSETAR CQRILAWNSN SSNAKGSQET LVNSELPLHF  300
PSPFDQNQLL FHREPLQSSF SPIRGPTLDS QFPNLCFSSA RFSSDGGLSE LSAAARIPGP  360
EKQKPVSSKP SSPTNLLHYQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-18121174154Putative transcription factor PCF6
5zkt_B2e-18121174154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101449.10.0transcription factor TCP10-like
TrEMBLA0A068TLA80.0A0A068TLA8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-35TCP domain protein 10