PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g16110
Common NameGSCOC_T00014086001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30788.9 Da    PI: 9.9457
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g16110genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.3e-312574150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Cc02_g16110 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                 79***********************************************8 PP
2K-box1126.3e-37941895100
        K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ s +ea+a+++qqe++kL+++i+nLq+++R++lGe+L+sL+l+eL+++e+++e++++++RskKnell+++ie +qk+e +l+++n++Lr+k++e
  Cc02_g16110  94 NTGSISEANAQHYQQEASKLRAQISNLQNSNRNMLGESLGSLNLRELKNIESKVERGISRVRSKKNELLFAEIEFMQKREVDLHNNNQYLRSKIAE 189
                  444599***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6131777IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-411776IPR002100Transcription factor, MADS-box
CDDcd002651.88E-441894No hitNo description
SuperFamilySSF554556.28E-331890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-331939IPR002100Transcription factor, MADS-box
PfamPF003191.4E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-335475IPR002100Transcription factor, MADS-box
PfamPF014863.0E-26100187IPR002487Transcription factor, K-box
PROSITE profilePS5129715.09103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSCQSDPSRE TSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKE TIKRYKTVNS DSANTGSISE ANAQHYQQEA SKLRAQISNL  120
QNSNRNMLGE SLGSLNLREL KNIESKVERG ISRVRSKKNE LLFAEIEFMQ KREVDLHNNN  180
QYLRSKIAET ERAQHDMNLM PGSSDYELVS AQPFDARTFL QVNGLQLNNH YPRQEQRPLQ  240
LVYDFLTSLF TTHQLTYMLR PLIMHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q4e-201785169Myocyte-specific enhancer factor 2B
1tqe_R4e-201785169Myocyte-specific enhancer factor 2B
1tqe_S4e-201785169Myocyte-specific enhancer factor 2B
5f28_A3e-2017101187MEF2C
5f28_B3e-2017101187MEF2C
5f28_C3e-2017101187MEF2C
5f28_D3e-2017101187MEF2C
6c9l_A4e-201785169Myocyte-specific enhancer factor 2B
6c9l_B4e-201785169Myocyte-specific enhancer factor 2B
6c9l_C4e-201785169Myocyte-specific enhancer factor 2B
6c9l_D4e-201785169Myocyte-specific enhancer factor 2B
6c9l_E4e-201785169Myocyte-specific enhancer factor 2B
6c9l_F4e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3322810.0GU332281.1 Coffea arabica MADS-box protein AG subfamily (C03) mRNA, complete cds.
GenBankKJ4832360.0KJ483236.1 Coffea arabica AG (AG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112013.11e-176floral homeotic protein AGAMOUS-like
RefseqXP_027160914.11e-176floral homeotic protein AGAMOUS
SwissprotQ408851e-143AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A068TLQ20.0A0A068TLQ2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000731341e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]