PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g16940
Common NameGSCOC_T00014196001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family DBB
Protein Properties Length: 213aa    MW: 23300.3 Da    PI: 6.0241
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g16940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-08333434
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                 ++C+ +e+  ++ fC  ++  lC++C ++ H
  Cc02_g16940  3 TICDVCESAAAIVFCAADEAALCPSCDEKVH 33
                 68**************************998 PP
2zf-B_box27.56.3e-095291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 e + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Cc02_g16940 52 EVPHCDICESAPAFFYCEVDGSSLCLQCDMLVHVGgkrtH 91
                 6789**************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
SMARTSM003361.7E-6147IPR000315B-box-type zinc finger
CDDcd000211.34E-5345No hitNo description
PfamPF006436.2E-6341IPR000315B-box-type zinc finger
SMARTSM003361.0E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9735196IPR000315B-box-type zinc finger
PfamPF006436.2E-75291IPR000315B-box-type zinc finger
CDDcd000212.37E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTICDVCES AAAIVFCAAD EAALCPSCDE KVHMCNKLAS RHVRVGLAEP SEVPHCDICE  60
SAPAFFYCEV DGSSLCLQCD MLVHVGGKRT HGRYLLLRQR VEFPGNKPGR SDELGLQPMS  120
PGEARREALQ PSKLATNENQ QNHNTCPIPM LENDNHVGDK MESKLIDLNA RPQRLHGQAS  180
SNQEQGMEML SGSNHESVSV VPVASFKREN DK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112149.11e-157B-box zinc finger protein 18-like
RefseqXP_027112150.11e-157B-box zinc finger protein 18-like
SwissprotC0SVM53e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A068TKZ01e-156A0A068TKZ0_COFCA; Uncharacterized protein
STRINGXP_002512996.11e-120(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-83DBB family protein