PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17010
Common NameGSCOC_T00014204001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 338aa    MW: 37123.5 Da    PI: 7.3019
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18255288134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  Cc02_g17010 255 CSHCQVNKTPQWRTGPLGPKTLCNACGVRYKSGR 288
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.8E-864334IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.952249285IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-13249303IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-14251312No hitNo description
Gene3DG3DSA:3.30.50.103.8E-14253286IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.16E-14254303No hitNo description
PfamPF003202.3E-16255288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDCMEAKALK SSLLSDIGGM KSSQQQGFVD DIWCVTGLNN VSCDDFSVDD LLDFSDKDFK  60
DGPLKEDEDF KDTLSLSSSQ HHHHHRNSNF SSFSETDDFG SLLAAELAVP AEEMENLEWL  120
SQFVDDSRSE VSLLCPAGSF KDNKGRLTEK WSEPAVHMIR VPCFPLHVPV KPRSKRSRPN  180
GRVWSGSPSL TTTESSSTSS SSYGSSALSP FILSNPVQDS EMLSSVEKPP AKKHKKKPAT  240
DTGSGSIGSQ TSRRCSHCQV NKTPQWRTGP LGPKTLCNAC GVRYKSGRLF PEYRPACSPT  300
FSQEVHSNSH RKVLEMRRKK EATGHVEAGL TPMVSSF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112156.10.0GATA transcription factor 5-like
TrEMBLA0A068TLY90.0A0A068TLY9_COFCA; GATA transcription factor
STRINGXP_009802570.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-51GATA transcription factor 5