PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g17110

Common Name

GSCOC_T00014217001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 205aa MW: 22272.8 Da PI: 8.7441

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g17110	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	102.4	8.2e-32	15	89	3	78
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel 78 s t++CqdCGnqakkdC++ RCRtCCk+rgf+C+thvkstWvp++krr r+ ++ + s+ +++ ++ ++kr+re+ Cc02_g17110 15 SSTTRCQDCGNQAKKDCVYLRCRTCCKTRGFQCQTHVKSTWVPVSKRRPRHPHQLIS-STPQHHLSDPNPKRSREE 89 57889********************************************97666554.444455677777777765 PP
2	DUF702	80.5	4.4e-25	86	145	96	155
DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 s++el ++P+e++++avfrcvrvss+d+ +++aYqt+v+i+GhvfkG+LydqG++++ Cc02_g17110 86 SREELIEGNFPAELNVPAVFRCVRVSSMDNVVDQFAYQTSVNIAGHVFKGVLYDQGPDNQ 145 344455566************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-51	17	143	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-26	20	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.9E-24	95	142	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MMRQDESGGA VGSSSSTTRC QDCGNQAKKD CVYLRCRTCC KTRGFQCQTH VKSTWVPVSK 60 RRPRHPHQLI SSTPQHHLSD PNPKRSREEL IEGNFPAELN VPAVFRCVRV SSMDNVVDQF 120 AYQTSVNIAG HVFKGVLYDQ GPDNQYNIPG ESSSGGGGGG GGSFQQPNLI TQTTSTSTPS 180 PHSTYPSPYS AFMPGAHFFP YPKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109649.1	1e-152	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	1e-52	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A068TLZ8	1e-150	A0A068TLZ8_COFCA; Uncharacterized protein
STRING	XP_009602229.1	2e-72	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-48	SHI-related sequence3

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]