PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17730
Common NameGSCOC_T00014297001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 42aa    MW: 4577.37 Da    PI: 11.304
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-081041134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     rg+ T+ Ed+l++++  +lG++ W++Ia++++ g
      Cc02_g17730 10 RGNITAAEDDLIIRLQSLLGNR-WSLIAARLP-G 41
                     8999******************.*******99.5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-7141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-13141IPR009057Homeodomain-like
PROSITE profilePS5129416.855541IPR017930Myb domain
PfamPF002497.4E-71041IPR001005SANT/Myb domain
CDDcd001673.40E-51441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 42 aa     Download sequence    Send to blast
MNYLRPGIKR GNITAAEDDL IIRLQSLLGN RWSLIAARLP G*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081674.16e-21protein ODORANT1-like isoform X2
RefseqXP_027181320.16e-21protein ODORANT1-like isoform X2
SwissprotP200251e-16MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A068TMA12e-20A0A068TMA1_COFCA; Uncharacterized protein
STRINGGLYMA07G05960.12e-17(Glycine max)
STRINGXP_007135274.12e-17(Phaseolus vulgaris)
STRINGXP_010100709.13e-17(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-18MYB family protein
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]