PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g18270
Common NameGSCOC_T00014366001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 255aa    MW: 29550.7 Da    PI: 7.237
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g18270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17221132100
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                  fk++   + l ++rl +p +f+++   g     +k ++le++ g  W+vk+ ++  +g ++l++ W++Fv++n L+e Df++F++d+  ++f  +v++
  Cc02_g18270  22 FKIF---NQLVENRLKIPPQFVRDVliG----IPKRIILETSYGSCWSVKV-VKTDDGDVFLGDDWQKFVEDNLLQEHDFLLFHYDHGdRCF--TVQI 109
                  5555...3344578********999644....4457***************.4666666***************************765888..**** PP

                  E-SS CS
           B3  97 frks 100
                  f+ks
  Cc02_g18270 110 FDKS 113
                  *985 PP
2B374.41.4e-231712511096
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  v+   ++++pk+fae+h +k   +++++l++ +g++Wev++  + ++g +v+ +GW +Fv++n+Lk g +++F+l+g++     v++
  Cc02_g18270 171 VNPPFLMIIPKSFAEKHFQK--AKTKIRLKNIEGKEWEVNY--TINGGNFVFVGGWTRFVRDNKLKIGNVCIFELIGEKVL--QVHI 251
                  3444789**********655..3458***************..999999***************************96655..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2017114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-2117114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.09818113IPR003340B3 DNA binding domain
CDDcd100178.12E-1919111No hitNo description
SMARTSM010193.5E-1121113IPR003340B3 DNA binding domain
PfamPF023622.7E-1621112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-29155253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-27157253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-21160253No hitNo description
SMARTSM010197.5E-16161253IPR003340B3 DNA binding domain
PROSITE profilePS5086315.763162254IPR003340B3 DNA binding domain
PfamPF023625.1E-21171251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVNKSLGKDK DEIILDQRPA FFKIFNQLVE NRLKIPPQFV RDVLIGIPKR IILETSYGSC  60
WSVKVVKTDD GDVFLGDDWQ KFVEDNLLQE HDFLLFHYDH GDRCFTVQIF DKSGVERTNQ  120
EVANSGTKNL DQHTTHVQPR EKSQSREEGA TLQEFCSQHP FFETNIKRYN VNPPFLMIIP  180
KSFAEKHFQK AKTKIRLKNI EGKEWEVNYT INGGNFVFVG GWTRFVRDNK LKIGNVCIFE  240
LIGEKVLQVH ISDD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112379.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_027112380.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_027112381.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_027112382.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_027112383.10.0B3 domain-containing protein Os01g0723500-like
RefseqXP_027112384.10.0B3 domain-containing protein Os01g0723500-like
TrEMBLA0A068TP360.0A0A068TP36_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.12e-20B3 family protein