PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g18670
Common NameGSCOC_T00014418001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 743aa    MW: 83037.3 Da    PI: 7.9979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g18670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-1535125199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v k  +l+lp+ f++ h  +   ++t++lede+ +++  k+    ++++  l++GW +F  a++L egD++vF+++     +l+v ++r
  Cc02_g18670  35 FVKPMIRSNVKKGFWLSLPRLFCKLHLPD--HDTTIVLEDENRKEYITKY--LAQRRG--LSAGWMGFSIAHKLVEGDVLVFHMVI--ANKLKVYIIR 124
                  89*********************999433..5679***************..666655..9**********************764..4456888887 PP

                  S CS
           B3  99 k 99 
                  +
  Cc02_g18670 125 S 125
                  5 PP
2B351.61.6e-16383471298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +k +++s+v+   +l+lpk+f++ h ++k+    ++l de+g++++ k+ ++k++    l++GW++F  a++L egD++vF+l++     l+v ++r
  Cc02_g18670 383 VKHMLRSHVTGGFWLSLPKQFCNIH-LPKKD-GIVVLVDENGEEYKTKYLVEKNG----LSGGWRGFSIAHNLLEGDVLVFQLIKPCV--LKVYIVR 471
                  688999****************555.55434.48***************777777....***********************998444..4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1828126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-1929126IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-2333124No hitNo description
SMARTSM010191.3E-1535126IPR003340B3 DNA binding domain
PfamPF023628.7E-1335125IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50535126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-20376473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-24376474IPR015300DNA-binding pseudobarrel domain
CDDcd100174.19E-25380471No hitNo description
SMARTSM010195.8E-23382473IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294382473IPR003340B3 DNA binding domain
PfamPF023621.1E-14383472IPR003340B3 DNA binding domain
PfamPF052661.5E-7621731IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MVGMHDLCGQ IKVTSSVMQR AEAVQETLDA KFPSFVKPMI RSNVKKGFWL SLPRLFCKLH  60
LPDHDTTIVL EDENRKEYIT KYLAQRRGLS AGWMGFSIAH KLVEGDVLVF HMVIANKLKV  120
YIIRSSRLAE VDAALCLLQL EGPATGNESG HRGDDCRDPQ PTGEKSKSSS QPESENISDK  180
DMLDNNLGLV MGRPESIDEH LQLALEGRRG SFSVLSNRTS CWQPTQTKKE KSCISRHLFE  240
PTVKISPHPK ILPLEVLPHQ TVDSSLSFCK RKSLIKGNTV EVRKMAISQF SPSKRSQYDP  300
STKLKQRKAS EFKKKPVKKN PCGTQHDKIN KGETHNIEKS LISYEKIGDK TGDHSAYGKP  360
KSSVLHRAHE VQAKLPSNFP CCVKHMLRSH VTGGFWLSLP KQFCNIHLPK KDGIVVLVDE  420
NGEEYKTKYL VEKNGLSGGW RGFSIAHNLL EGDVLVFQLI KPCVLKVYIV RANGLTELDG  480
AICLLNLDFQ DKSIDSANLK EENEDVKNCK TAEPDYSGPL ANVLERGIVA VSSGHMPESA  540
RRSASDNNEL SLEVLDGVRF SESDVQFKDV KGFNGFSILV DGLVIDSEIP LHLRAKYYQL  600
CCSQNSFLHD HLIKGLNCKL AAGIISETVN IADAIRAAKL TTSCEYLQTW DKTLKAFEDM  660
GMAVEFLRAR IKALISLPTE QEESMKSRTA ERAQLQEEMR NLETKLLNVK EVIGTVDADI  720
KALEVQEENL EEIFKEKATA PW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105925.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A068TP840.0A0A068TP84_COFCA; Uncharacterized protein
STRINGXP_009612763.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-40B3 family protein