PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g19420

Common Name

GSCOC_T00014508001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 168aa MW: 18731.2 Da PI: 9.2213

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g19420	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cc02_g19420 47 FSCNYCRRKFYSSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.75E-7	44	73	No hit	No description
PROSITE profile	PS50157	11.157	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKTREGNDGR AADLNPGERL NLYLATNQPS AFGDPDPQSG RIPNKVFSCN YCRRKFYSSQ 60 ALGGHQNAHK RERGAMRSYQ SQFMVAFPVN TSMIRSLGVQ AHSLVHKTDG DRGTMVAKLT 120 EANMGPQMLQ CREETMELMW PGSFRLDQAP PQPKTSNQDE LDLNLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106041.1	1e-124	zinc finger protein 7-like
TrEMBL	A0A068TPG4	1e-123	A0A068TPG4_COFCA; Uncharacterized protein
STRING	VIT_03s0091g00260.t01	2e-50	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3269	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	9e-23	zinc finger protein 7