PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g19720

Common Name

GSCOC_T00014546001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 190aa MW: 20575.5 Da PI: 8.1978

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g19720	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.3	8.8e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA+ r+ +Pv+G+vg+++++++ql+q+++e Cc02_g19720 2 SCNGCRILRKGCNENCILRQSLqgigsPQAQANATVFVAKFFGRAGLMSFLSAVPEPQRPALFQSLLYEACGRTVNPVSGVVGLLWTGNWQLCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Cc02_g19720 100 TVLR 103 8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.692	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIGSPQ AQANATVFVA KFFGRAGLMS FLSAVPEPQR 60 PALFQSLLYE ACGRTVNPVS GVVGLLWTGN WQLCQSAVET VLRGGVLRPM MNLPAEPQEA 120 VDHDDASEAS RLCLNLSARV TAGGRVKRRS ATPEESETST MESCYDYTAS NYYQNLKGGE 180 GTKLLRLFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106083.1	1e-138	LOB domain-containing protein 37-like
Swissprot	Q9SZE8	2e-61	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A068TPI6	1e-137	A0A068TPI6_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400066165	1e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-63	LOB domain-containing protein 39