PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g20240
Common NameGSCOC_T00014630001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26048.3 Da    PI: 8.8058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g20240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.46.6e-221561147
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                 k+i+n snrqvtfskRr g++KKA+EL+vL++aeva+i+ s   +++
  Cc02_g20240 15 KKIDNLSNRQVTFSKRRVGLFKKASELCVLTGAEVAIIVQSLGKRVF 61
                 68*************************************99766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.39767IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-25879IPR002100Transcription factor, MADS-box
CDDcd002651.93E-30875No hitNo description
PRINTSPR004043.7E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.1E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKKKTTQGRK KIEIKKIDNL SNRQVTFSKR RVGLFKKASE LCVLTGAEVA IIVQSLGKRV  60
FAFGHPSIDA VINRYTTGSA SSSSSSSSSS SSVADPNTPL GAHEIQQHNR HYAKVSKELE  120
VERKRKELIE GSKLENGGSF WWDDPIEHMG LEELQQYKAS LEELKKKLLM RADDLMLLKN  180
SSSSSTNLGF NNSGDINPGV TAVGCDDMFF NQTTTEHCNN SIVPYGSDDF GNSLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A3e-15888181MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B3e-15888181MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1tqe_P4e-15888282Myocyte-specific enhancer factor 2B
1tqe_Q4e-15888282Myocyte-specific enhancer factor 2B
1tqe_R4e-15888282Myocyte-specific enhancer factor 2B
1tqe_S4e-15888282Myocyte-specific enhancer factor 2B
6c9l_A4e-15888282Myocyte-specific enhancer factor 2B
6c9l_B4e-15888282Myocyte-specific enhancer factor 2B
6c9l_C4e-15888282Myocyte-specific enhancer factor 2B
6c9l_D4e-15888282Myocyte-specific enhancer factor 2B
6c9l_E4e-15888282Myocyte-specific enhancer factor 2B
6c9l_F4e-15888282Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3087951e-103AJ308795.1 Coffea arabica microsatellite DNA, clone 23-4CTG.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101418.11e-161agamous-like MADS-box protein AGL62
RefseqXP_027101419.11e-161agamous-like MADS-box protein AGL62
TrEMBLA0A068TLW81e-175A0A068TLW8_COFCA; Uncharacterized protein
STRINGXP_009602824.17e-74(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-31AGAMOUS-like 62