PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g20800
Common NameGSCOC_T00014699001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 370aa    MW: 40478 Da    PI: 5.2263
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g20800genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15210246135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cc02_g20800 210 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 246
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-874109IPR010399Tify domain
PROSITE profilePS5132013.74674109IPR010399Tify domain
PfamPF062002.1E-1177108IPR010399Tify domain
PROSITE profilePS5101712.759142184IPR010402CCT domain
PfamPF062036.4E-15142183IPR010402CCT domain
PROSITE profilePS501148.84204252IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-12204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-11205254No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.42E-15209256No hitNo description
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13210246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MASTLNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM  60
PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKV QAVLLLLGGR DVPRSIRSSE  120
FLLQQNCKTT DDGSSQPNVS RRIASLVRFR EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ  180
FASLKDAGKA AENWESGEVT PHQEHVSRRC QHCGVSEKST PAMRRGPGGP RTLCNACGLM  240
WANKGTLRDL TKGGRSACFD QSDPETPEMK ASSMEPENSY HNQDEEGSSE DAKPMFVESG  300
CPSLGPNAQD LLETAQGLSG DSPVGLGNSS INLDEQETLD ELANASGTEF EIPSNFDEQV  360
WLSSNADLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106173.10.0GATA transcription factor 19-like isoform X2
TrEMBLA0A068TMB90.0A0A068TMB9_COFCA; Uncharacterized protein
STRINGcassava4.1_010245m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-54ZIM-like 1