PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g20830
Common NameGSCOC_T00014705001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 329aa    MW: 35381.9 Da    PI: 6.8886
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g20830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-16250285134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg
  Cc02_g20830 250 CRHCGISSksTPMMRRGPAGPRTLCNACGLKWANKG 285
                  *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-10114149IPR010399Tify domain
PROSITE profilePS5132015.105114149IPR010399Tify domain
PfamPF062001.3E-12117148IPR010399Tify domain
PROSITE profilePS5101713.225181223IPR010402CCT domain
PfamPF062033.0E-16181223IPR010402CCT domain
PROSITE profilePS501148.84244292IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-12244298IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11245295No hitNo description
Gene3DG3DSA:3.30.50.106.6E-15248291IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.47E-15249299No hitNo description
PfamPF003201.4E-13250285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440250277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNNVQRQHHP HHHHHQQQQQ RQPGPHHPHN HLEDEEDDDD VSAGGGGGEE SIDNPHPHSH  60
DPHSQIRYDA PSHSHALHNG GGVTNMDSAL NGVEGVGPHG LYVPGSEIAP APAAGAGSDQ  120
LTLSFQGEVY VFDSVSPEKV QAVLLLLGGY EVPTGIPAVG MASQNPRNLS DLPGRSSQPQ  180
RAASLNRFRE KRKERCFDKK IRYTVRKEVA LRMQRKKGQF TSSKSVSEEV GSSSSDYNPM  240
SGQEEQETSC RHCGISSKST PMMRRGPAGP RTLCNACGLK WANKGILRDL SKVPAAGIHD  300
VIVKASEQSN GEANDSDGVT AAVDIITS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154412.10.0GATA transcription factor 28-like
SwissprotQ8H1G02e-80GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A068TN420.0A0A068TN42_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000837731e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-78ZIM-like 1