PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g23180
Common NameGSCOC_T00015001001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 375aa    MW: 42585.9 Da    PI: 6.9482
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g23180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.5e-151353545
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +  r++tf kR++g++ K +E  +LCd+++++ii++++++
  Cc02_g23180 13 KEKSRHITFKKRKEGLMRKIHEFATLCDVDACMIIYGPKQE 53
                 56789*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.17151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-17282IPR002100Transcription factor, MADS-box
CDDcd002666.10E-19250No hitNo description
PRINTSPR004041.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRAKLNMEL IGKEKSRHIT FKKRKEGLMR KIHEFATLCD VDACMIIYGP KQESASMESG  60
IWPENSDEIS RMIDTYQGKS KDSATRVFGL QDFFQDRNKR VEDELDKVRK KAAEIQYPTW  120
IDPMSHLSEM ELRKFAAAVS DKIEVVDSRM EAICRGYDDD DDDHLHHHLL LHNHHHNHYS  180
QIQNRYLMTE GSQQQPTIDF TAAATSYNNN DNARLSGLIQ RGVELELMNH QQVSIGPAPV  240
NPVEMHVPMA HYPAAATIHH QMNENEHHHH HHQVQLGGSA SSIQCASFKY YGSSSGGGGG  300
MVAGRGGGVL DNMVYNHPRP LARYYGPSVQ PVVAPYVQYP HLMPNVSPQM QSLRENDYND  360
MIHYRVMDQK PPRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157670.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A068TNU90.0A0A068TNU9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-24M-type_MADS family protein