PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g23540
Common NameGSCOC_T00015053001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 598aa    MW: 71350.5 Da    PI: 9.1938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g23540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-086382625
                 -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                 C+f+++tG C++G+rC++ H
  Cc02_g23540 63 CPFHLKTGACRFGSRCSRVH 82
                 ******************99 PP
2zf-CCCH27.74.8e-09219246126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  ++++   tC++G  C+F+H+
  Cc02_g23540 219 WKVAICGEYMKSKlkTCSRGTACNFIHC 246
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6715785IPR000571Zinc finger, CCCH-type
SMARTSM003561.45884IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-66282IPR000571Zinc finger, CCCH-type
PRINTSPR018481.6E-346382IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.6E-3482102IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.3E-2288214IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.876135216IPR000504RNA recognition motif domain
SMARTSM003613.1E-6136212IPR003954RNA recognition motif domain, eukaryote
SuperFamilySSF549289.0E-16147215IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.6E-34173195IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.6E-34200224IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.897218248IPR000571Zinc finger, CCCH-type
SMARTSM003560.022218247IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6219246IPR000571Zinc finger, CCCH-type
PRINTSPR018481.6E-34238250IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MKKKDAEQKW EEDPDRPTSN PLPPQSEAFA DFKSSSTVSA QQLLENVAQQ IPNFGTEQDK  60
AHCPFHLKTG ACRFGSRCSR VHFYPEISCT LLIKNMYNGP GLAWEHDEGL EVFVCNGIIY  120
TKGFFFYWFH WRDFLPLYYT EEEVEHSYEE FYEDVHTEFL KFGEIVNFKV CRNGSYHLRG  180
NVYVHYRELD SAVLARRFIN GRYFAGKQVN CEFVGVTRWK VAICGEYMKS KLKTCSRGTA  240
CNFIHCFRNP GGDYEWADWE KPPPKYWVKR MAALFGYSHE SGYDKWVEQE TKGQRRNSSK  300
SLTADEERYR SRRSLSREIK SSNSSPRDNY KEDKFRRSKY SKRYRSDDTK RLEVPDEREY  360
EEERQSRSHQ RGKRRQYERE FDRGWLDEEK DGDGYSYSTR NTRESSRSPF RRRSQSHDCR  420
EIDKRKIPEK ISRKNHASGK RKTRGDDYSD EDEDSDTRGR REIDKDDTRE HHRHNHSKHH  480
KHNRSGRKTS KADYADKHNE DIDKRGCWEP EMVDTREYHK HNHSSRKPRK CDYAGEHHED  540
IDKGGHWEPE KLDTREHHER RRKSHGRSGS HDQNVDKHSR KSRSSNQKRK SYSRERD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A4e-27542459167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163709.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A068TMT60.0A0A068TMT6_COFCA; Uncharacterized protein
STRINGMigut.B00725.1.p1e-163(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA818966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-133C3H family protein