PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g23810
Common NameGSCOC_T00015084001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 369aa    MW: 41942 Da    PI: 8.3258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g23810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49251502128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + 
  Cc02_g23810  25 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRS 121
                  79***************************.89***************8778899******************************************** PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  +glkktLvfy+g+apkg +t+W+m+eyrl
  Cc02_g23810 122 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 150
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-5524170IPR003441NAC domain
PROSITE profilePS5100555.3924171IPR003441NAC domain
PfamPF023651.0E-2426150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAIAATMSQE NNNKDEHEHD HDMVMPGFRF HPTEEELIEF YLRRKVEGKR FNVELITFLD  60
LYRYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA DRMIRTENFR  120
SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERLQK AEISLCRVYK RAGVEDHPSL  180
PRSLPTRASS SRGTTSSSAK KSQEATNHAS MERFQAFVGN PQQLDEKLSE TSGSSCTDIG  240
TSLGLSKHNT FMSLAPMTTT LSQLCSTTLA PDCTTIFAGS SFVPTVNTTL DDLHRLVNFQ  300
QASMSQHQQQ YHNNPNHPSQ FSSLQPQVQQ SLALNMLPGP LQAAFTDRLW DWNSINEASK  360
DFNNSPFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-562617119165NO APICAL MERISTEM PROTEIN
1ut4_B9e-562617119165NO APICAL MERISTEM PROTEIN
1ut7_A9e-562617119165NO APICAL MERISTEM PROTEIN
1ut7_B9e-562617119165NO APICAL MERISTEM PROTEIN
4dul_A9e-562617119165NAC domain-containing protein 19
4dul_B9e-562617119165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113345.10.0NAC domain-containing protein 35-like
RefseqXP_027160821.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-120NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A068TNX50.0A0A068TNX5_COFCA; Uncharacterized protein
STRINGcassava4.1_009166m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-112NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]