PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27050
Common NameGSCOC_T00025022001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 356aa    MW: 38830.9 Da    PI: 7.7044
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17157211256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Cc02_g27050 157 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 211
                  778899***********************************************98 PP
2HD-ZIP_I/II127.94.4e-41157247192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk
  Cc02_g27050 157 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-ALK 247
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-17138211IPR009057Homeodomain-like
SuperFamilySSF466892.61E-18148214IPR009057Homeodomain-like
PROSITE profilePS5007117.119153213IPR001356Homeobox domain
SMARTSM003891.7E-15155217IPR001356Homeobox domain
CDDcd000869.68E-15157214No hitNo description
PfamPF000464.0E-15157211IPR001356Homeobox domain
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
PfamPF021835.7E-11213247IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-26213256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDADADDVDE DDDRTSSEHT RDDDDRRRGI SVDTPLQLNL LPLAPVPRRT PIHTQPLRWS  60
SDNGSSGSSG NVGLPVVGRG FDVNRVPAVG GVAEEVSSPN SVASSFQMDF SIFRGGGNLG  120
NGGNKRDFGA AGGNDVVEAE RTSSRASDED ENGLNTRKKL RLSKEQSAYL EESFKEHNTL  180
NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT DENRRLHKEL  240
QELRALKTSN PFYMQLPATT LTMCPSCERV ATTSTAPSTT TTTAAAAAPV PSTTTTTPAT  300
NVKSTTTATT TTSDNAPKAI PFPISRPRFY PFAAAAAHTN HPHHHHHHHH QSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161TRKKLRL
2205213RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113631.11e-179homeobox-leucine zipper protein HOX11-like
SwissprotP466653e-88HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A068UGN40.0A0A068UGN4_COFCA; Uncharacterized protein
STRINGXP_009617361.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-68homeobox from Arabidopsis thaliana