PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27100
Common NameGSCOC_T00025028001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 696aa    MW: 76222.9 Da    PI: 10.4407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.4e-101444435
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgR 35
                     W+t+E++ll+ avk++G ++W+t+ar+++ +R
      Cc02_g27100 14 WSTWEELLLASAVKRHGLKDWDTVARELQ-NR 44
                     *****************************.76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-5746IPR009057Homeodomain-like
SMARTSM007171.6E-41073IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-51472IPR009057Homeodomain-like
CDDcd001679.27E-61444No hitNo description
PfamPF002495.9E-81445IPR001005SANT/Myb domain
SMARTSM002979.0E-14124423IPR001487Bromodomain
SuperFamilySSF473704.19E-16327423IPR001487Bromodomain
CDDcd043694.55E-15328418No hitNo description
Gene3DG3DSA:1.20.920.101.4E-15328440IPR001487Bromodomain
PfamPF004396.9E-11329408IPR001487Bromodomain
PROSITE profilePS5001411.574333404IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSNAADVDTK ELIWSTWEEL LLASAVKRHG LKDWDTVARE LQNRHRHRSS SSLPPTLFTA  60
QICKNKFKHL RRRFTNNHRS ASNNTAVTAG AGGGEGDCFP WLEELRKLRV AELKQEVHRY  120
DLSIRSLQMK VKTMEEEREK SLREDDDQHD DVKKPDLDEE VKQERSENDK NDGKDPPEMV  180
AGKFLSGDND ENMSYNESNS TESKRAGLKV EPKNEPAEAE PESESKPVGE EVSCNDSSAS  240
QERGKGGGDS RELRDSVGED ESKEGTKESS DVQSSASLLT RKRRRRGVDG GGGGGGDGVA  300
VLSPATAPIK REGGVGGAVK SEPSAFGFLD KIRSHKHGSV FERRLESQKT EKYKSTIRRH  360
VDLEIVQARI DDGSYTSCFL KFYKDLFLLF TNAIVFFPKS SPEALAAQEL RQLVLKELKN  420
ASSDPSPQPS LPAKPKPKPE VERSDSLLAK HKSTNPIFFS RKRSSISAKA SSSSANNAEK  480
QRTNEKAVIN SKTLIKSPLS TSTNDDEDSS KLKLKEKPVT GARSMRRSSK GRPNVSKPEP  540
TPNSSNNKSS SSQQPGSKDK GDKAEAAKGD KKKSEAIAST KKSGAADFLK RMKKNSPTKG  600
TLVEALKSSR ENNSNKGGRK DQPKKKVDER KDGPARRSGG GGGGRKHVKE ESSPLKKNAG  660
RPPKKGKDVV VTGGKRGREG GEGEGSSKRP KKRSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280284RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113641.10.0uncharacterized protein LOC113732187
RefseqXP_027157888.10.0uncharacterized protein LOC113759511
TrEMBLA0A068UGN80.0A0A068UGN8_COFCA; Uncharacterized protein
STRINGXP_009602840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-47DNA-binding bromodomain-containing protein