PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g28190
Common NameGSCOC_T00025186001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 245aa    MW: 28074.9 Da    PI: 9.4822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g28190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48e-1192143154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  +r+ h  +Er+RR+++ + ++ Lr llP      +++K s  + +  A +YIk+ 
  Cc02_g28190  92 KRTFHRDMERQRRQEMANLYASLRNLLPLeY---TKGKRSITDHVHVAENYIKQI 143
                  799**************************77...*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1289158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-889148No hitNo description
PROSITE profilePS5088811.99291143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-892143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-992159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDDFTNYLFP LQQDDPLLFQ YSPIPSVSFY HKDPTIHRQD LVNQGASSLV SLQPNTGENR  60
NSTARKRQQK PSPAVQADNH DCGKNPVDRK QKRTFHRDME RQRRQEMANL YASLRNLLPL  120
EYTKGKRSIT DHVHVAENYI KQIEKNIRKL EVKRDKLRNL TGGSSYVHLK NVEGKNSFSI  180
NFTVRPCSAG GIEILMKRYV ADTNLVPLSR ILDVLLDEGL TVVSCVCTRV NEEFIYTIQT  240
EVQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KRTFHRDMERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113753.11e-174transcription factor bHLH118-like
TrEMBLA0A068UHV80.0A0A068UHV8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-36bHLH family protein