PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g31030
Common NameGSCOC_T00023867001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 157aa    MW: 17624.3 Da    PI: 9.6845
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g31030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.51.6e-1990137351
      G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  +++Wt++LH++Fv+a++qL G+    P++il lm+v gLt+ +v+SHLQ
  Cc02_g31030  90 KRVWTSKLHAKFVDAINQL-GEGGCFPSEILALMNVSGLTRMQVASHLQ 137
                  789****************.9999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-4158No hitNo description
PROSITE profilePS512949.73385144IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-1889137IPR009057Homeodomain-like
SuperFamilySSF466896.63E-1390140IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1790141IPR006447Myb domain, plants
PfamPF002498.7E-691137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSDFEDPFIA RRALERGAFL YAKKPASLEL VKCLWQYVVR ERKQKGKEKE NVQKKNEKKG  60
KGKAEVIING QEVMNGELGD LPNYTDSLSK RVWTSKLHAK FVDAINQLGE GGCFPSEILA  120
LMNVSGLTRM QVASHLQVSF QSALQRINIL FDCYGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075878.13e-87two-component response regulator ORR21-like
TrEMBLA0A068UGT21e-112A0A068UGT2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-15response regulator 10